rs50198775 SNP Detail

Summary

• ID
  rs50198775
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAGAGA CCCAGTTCAA
  CCAGGGAAAT ACAGTTCACA AAGTATTTTT ATCCATGGAA ATAAATCAGA AAACAAAACT
  AGCCTCAGCA TTTGGAAAGG AGGATCAGGA ACTCATGGTT ACCTTGACTA TCCAAGGAGT
  CCAAGGTCAG CCCAAGCTAT GCAAGACTGC CTCAAAAACC AAATAAAACA TCTCCCCCAC
  C
  CCCACAACCA GCGCTCTTAA GACTAAGCCG AGAGGTGTGA ACAGCGTTCT GTCATGACTC
  AACTCATGGA TTTAACACCG TGCTCTCCTG AAGGACACTC ACCTACTCAG AAGCAGAAGT
  GAGGAAGGTG AAGATGGGGG AGTGGGGAGT AGAGACACTG TAAGTAATTC ATGTTAAGAG
  GAAAACTGCC ACTGAGAATC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144899297	ENSMUSSNP5035707	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs50198775					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192399 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1802 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	141 bp downstream