rs50200007 SNP Detail

Summary

• ID
  rs50200007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:79681627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACCAAGC AGCGAGGAGA
  GCATTCTACA TTGTGGTTTC ACGACGTCAC CCACTCTCTT GTCCAAAGCA CTGGAGCAAT
  CCACATCTTG TATAGTGTAA GGGGAATCCA ATGAAAAACC AGCAGTTAAA AGTGACGCTA
  CATAAAACAT AAAGGGGGCA AAACATCCTT TGGTCTTATT TCTCAAGTCA AGAGCTCTCT
  R
  TAAATACAGA GCCCATTATG CCTGGCTGCC TTTCCTTTCC TCATTGTTTG TGTTTTATCC
  ATTGTGACCC CATAGCTTTT CTGCCTGTTT TTTTTTTTTT TTTTTTTTTT GTTTTTTGTT
  TTTTTGAGAC AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT GGAACTCAGT TTGTAGACCA
  GGCTGGCCTC GAACTCATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144782627	ENSMUSSNP1644193	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50200007					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79681627 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr413842	regulatory region 413842			92 bp distal
Wdfy1	WD repeat and FYVE domain containing 1			mRNA-UTR
				Noncoding-Transcript-Variant