rs50200631 SNP Detail

Summary

• ID
  rs50200631
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71557980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT CTACCTTGAC AGGAGACTGT
  R
  AGAGAACTAG TGTGATGGTT GGTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146748939	ENSMUSSNP702180	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320339906	CHEV_2_71565693	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50200631					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71557980 () rs orientation: forward

Symbol	Name	Function Class
Platr26	pluripotency associated transcript 26	within coordinates
Rr558814	regulatory region 558814	75 bp distal
Rr558815	regulatory region 558815	1109 bp proximal
Rr558816	regulatory region 558816	1210 bp proximal