rs50201666 SNP Detail

Summary

• ID
  rs50201666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43870970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGCCAA ATAACAAATG
  ATCTACGATC AGCTAACAGG AACAAAGGCG AAATGAATGG GAAGTGGACC AGCAGAAAAC
  TAACTTGTGC TTGAGAGACA TTTTTTTTTT TTCTTTTCTT GTTTTTTTCT GATAAAACCT
  TTAGGATTTC TATGTAGTAC AGGTGGATTG TCAAAAGGCG ATGAAAATAC ACAGCTCAGT
  R
  ATGAAGAGCT TATAATTGGC ATGTGTGAAG CTCTGGGCTC ACATCCTGCA GTGCTGGGCT
  GGGGTGGGGT GGTCCTGGAG TAAGGGAGGT TTGTCCCAAG AACCTTTCCT GGTGCCCCAT
  GAGCTCAAAG CTATGCTCAT AGTAACAAGA GGTTATCTGC CCTTTCTGAG TGAGTATGGG
  GTCTACAGCA CGCCATTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52253979	NES15255769	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50201666					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52253979	NES15255769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43870970 () rs orientation: forward

Symbol	Name	Function Class
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
Rr384605	regulatory region 384605	316 bp upstream
Rr430903	regulatory region 430903	1072 bp proximal
Tssr97483	transcription start site region 97483	1363 bp downstream