rs50201883 SNP Detail

Summary

• ID
  rs50201883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104696545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCAGTCT CAGCCTCCGG
  CACTGGCCGC GCAGCTGGAG GCGGTGGAGC CCAAGGTACC GGGGCCCCAG CTGGTGGGTG
  GCGAGGCGTC GTGGGAACTG ACCTCGGAGG AGAGCACTTT CCCGATTCCC GGATCGCTCC
  GGGAGCGGCT TGGGGGGCGG GGGGTGTTCC GGGCCAGGCA AGAGAGAGCG CCCCAAGCTG
  Y
  GGGCCAGGCG CTCTAGCCTT CCAAGCTCTC GAACCAGAGC CCAGAGTCCT TCCCTTTCTG
  AGTCTTTCCT TTCTGGACCT CCCTAGCTGG GCCAGGGACA CACTTAGATC TCCGTGAGCG
  ACTCAACCCA GACGCTCCAG TTCCGGGCAG GGAGTAAGAA ACAGGGCCTC AGGCTGGCTA
  GGGGTGGGAG TTCTGGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60431849	NES15936373	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50201883					SNP	T	T	T	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431849	NES15936373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104696545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	within coordinates
Gm66976	predicted gene, 66976	within coordinates
Rhoc	ras homolog family member C	within coordinates
Rr77009	regulatory region 77009	within coordinates
Tssr31056	transcription start site region 31056	634 bp downstream
Tssr31057	transcription start site region 31057	388 bp downstream
Tssr31058	transcription start site region 31058	374 bp downstream
Tssr31059	transcription start site region 31059	183 bp downstream