rs50202179 SNP Detail

Summary

• ID
  rs50202179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94352589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCCATCC CATCCCAGGT
  ATTTTTATTT GTGGTTGGCT ATATTGTGTT GCCTCTTAGA AAAAATATTT TGGGGGTCTG
  GGATATAGCT CTTTAAGCCA ACGTCAACGT CAGTCAGTTA AATAGTATGG TCAAGACTAC
  ATAAGACCTT GTCTCAAAAA AGAAAAAAGA AAAGAAACTT GATTTCTATT GTCTGCCAGA
  Y
  ATTACACACA GAACTAGAGG GCCTCCGGAT GGCACCATTT TCTTCCACAG TAAGGCCTTT
  CTCCTTCCTC TGTGAGGTAA GGAGGGATCT CTGTTACAGG ATATTTGATT ATTGTACATA
  GAAAGCCCGA TTGCTAACAA AATATAAAAG CTTAAATAGA TGTCACAGGC AGTTAGGTGA
  GCCCAGTAGA GATGCAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	PWD/PhJ
ss60514796	NES16523663	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	PWD/PhJ
rs50202179					SNP	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514796	NES16523663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94352589 () rs orientation: forward

Symbol	Name	Function Class
Gm56630	predicted gene, 56630	484 bp upstream
Rr328341	regulatory region 328341	212 bp proximal
Rr392165	regulatory region 392165	within coordinates
Tssr139557	transcription start site region 139557	480 bp upstream