rs50202548 SNP Detail

Summary

• ID
  rs50202548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100820220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC AAGTCTCTCT TGTAGCTTTG
  Y
  CACCCAGAAT CTAAGAACAG AATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148928088	ENSMUSSNP5067920	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321627400	CHEV_5_101101373	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50202548					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100820220 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Cpgi16113	CpG island 16113			1353 bp proximal
Gm15777	predicted gene 15777			within coordinates
Rr615537	regulatory region 615537			639 bp distal
Rr615538	regulatory region 615538			745 bp distal
Rr615539	regulatory region 615539			100 bp proximal
Rr615540	regulatory region 615540			1069 bp proximal
Rr615541	regulatory region 615541			1900 bp proximal
Rr615542	regulatory region 615542			1920 bp proximal
Tssr52113	transcription start site region 52113			1876 bp downstream