rs50202608 SNP Detail

Summary

• ID
  rs50202608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47261041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTAGGATT TACTCTTCCA CTGCCAGGGC TGCTCCTTCC
  TATTGTCATC AATGAACTCG GTCCTTCCCA TCACTTATCT CTGGTCAAGT ATTTCTCTTA
  Y
  CTCCAGGCCA TCACTGTTTT GATACCATTC TCATCCGTTC CTTTATAAGT ACCGAATCCT
  CTGTCCATCA TAACAGGCCT GCCATCTTGA AGACGAGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148985289	ENSMUSSNP4018136	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324335506	CHEV_13_47202933	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50202608					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47261041 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	705 bp distal
Dek	DEK proto-oncogene	1364 bp upstream
Rr479039	regulatory region 479039	1129 bp distal
Rr479040	regulatory region 479040	507 bp distal
Rr479041	regulatory region 479041	1184 bp proximal
Tssr119626	transcription start site region 119626	1973 bp downstream
Tssr119627	transcription start site region 119627	1154 bp downstream
Tssr119628	transcription start site region 119628	1135 bp downstream
Tssr122371	transcription start site region 122371	1943 bp upstream
Tssr122372	transcription start site region 122372	1863 bp upstream
Tssr122373	transcription start site region 122373	1818 bp upstream
Tssr122374	transcription start site region 122374	1690 bp upstream
Tssr122375	transcription start site region 122375	1455 bp upstream
Tssr122376	transcription start site region 122376	1437 bp upstream
Tssr122377	transcription start site region 122377	1394 bp upstream
Tssr122378	transcription start site region 122378	1359 bp upstream
Tssr122379	transcription start site region 122379	1344 bp upstream
Tssr122380	transcription start site region 122380	1332 bp upstream