rs50204170 SNP Detail

Summary

• ID
  rs50204170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126263011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAACAAAT AAAGAATGAG
  TTTCCTTAGA AGAACTGCAG GGGTAGGCAG AAGAACGCAT AGATAATTTT GTAAGATATG
  AGCAGGGACC TGGTCATCTT TCTTCTCTGT CATCCTGAAC AGTCAGGTCC TTCTCCTCCT
  GTTACATTTT GTTCTTGTCA TATTTTAGAA ACAAGTAAAA GAAGGGGAAA TGAGAAACAC
  R
  CCTGCAGCCT CTCACACGCG GAAGACCCTC CTACACTACA AGCTACATCT GGTGCACGTA
  GTGTTTATGC TACCTGCTAC TGCATGGTAA GTCACTCCAG TTCTCCACAA GGAAATGACA
  CGTGTCTGCC ATCTGGATAC GTATCAAGAG GGAAAGGCTA AGCTCTGGTC TGTCCAGGCA
  ATATCATTTG AAATAGCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135833526	ENSMUSSNP748084	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320945472	CHEV_3_126172280	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50204170					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126263011 () rs orientation: forward

Symbol	Name	Function Class
Gm17225	predicted gene 17225	within coordinates
Gm46823	predicted gene, 46823	within coordinates