rs50204849 SNP Detail

Summary

• ID
  rs50204849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:98438663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGTATG AAGGTAGGAG
  ACACACATGG CTTAGAAGCC ATATTTATAC AGAAACTGGA CAATATGCAT GCTAGCTGGC
  AGGTATATCT GCTACGCCAA AATAATGCAA TGCAGAAGTT CATGCAGAGC CCACGAGGGA
  GTTCAGGACC TACGCACTGA CTTAGAAGCA GACACTGCAT CTATCTATAG ACAGTACCAG
  R
  AGGAACTAAT ATAGTAAGGT CTCAACTAAT CAAACTCAGT GTTGAGCTAC AGTAGAAGAC
  CAGACTACAG CATGAAGTAG CTCTTTAGAA GACTCTAGTA AGCAGTTATT TCTAGTCCAC
  TACAGAGTTC TAGGAAACTT AACAACAGGT TTACTGTGAA GAAATGCTAT GACACCAAAT
  ATGACAACCT TTGTGCTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss63625997	NES17036607	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50204849					SNP	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63625997	NES17036607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98438663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccnt1	cyclin T1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr132942	transcription start site region 132942			602 bp upstream
Tssr136244	transcription start site region 136244			1839 bp downstream