rs50205091 SNP Detail

Summary

• ID
  rs50205091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37512704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    Aagtgctca gagtgctcag agtgctcaAC
  TGCACAAaac cacaaaggca ggcagtaata tagaacacag tgccagctga gccagaaaac
  cacgagaatg atggcagaag gaatccttac cgatcagtga gtgctgtgga tggaaacgga
  Y
  tcggctctcc catgaaaaag agtgactgag tgggttaata ttctctctca ttctctctct
  ctctctctct ctctctctct ctctctctct ctctctctct cacacacaca cacacacaca
  cacacacaca cacacacaca cacacaccag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148941421	ENSMUSSNP3055366	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss319691751	CHEV_1_37530468	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50205091					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37512704 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	1020 bp upstream
Rr409534	regulatory region 409534	1437 bp distal
Rr409535	regulatory region 409535	within coordinates
Rr409536	regulatory region 409536	183 bp proximal
Tssr11302	transcription start site region 11302	1832 bp downstream