rs50205188 SNP Detail

Summary

• ID
  rs50205188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156769180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG AGGATCAGAG TTCAGTCCCT
  R
  CATGATGAAT ATAAAGCTAG ATGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145809629	ENSMUSSNP7048261	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320073084	CHEV_1_158871741	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50205188					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156769180 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	1415 bp downstream
Cpgi904	CpG island 904	1381 bp distal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	1984 bp upstream
Tssr9581	transcription start site region 9581	1921 bp downstream
Tssr14478	transcription start site region 14478	1995 bp upstream
Tssr14479	transcription start site region 14479	1953 bp upstream
Tssr14480	transcription start site region 14480	1570 bp upstream