rs50205564 SNP Detail

Summary

• ID
  rs50205564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36726423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCAGAGA AGGCCTTCCT
  TGGTGAAGCC CTCCACCCCA TGCCCACATG TGAGTTCAGC TGGACTGAGA GCCAGTCCCA
  ACCTGTTCCA GACTCCACTT CATCCTTCAA GCCTGGTGCC TGGACACCCT GAGGGAGGAA
  ACAGAGGACA GAGAAGCACT TCTGGCACCC AACGCGGCCC ACAGCTGGAG GAAGCTAACA
  Y
  ACACCTGGGA GGATGCTGGT ACTTGATGGG CTGGGCTATG TCACAAGAGG GTGTGGTACA
  GACCTTTGAT GGGCTGGGCT ATGTCACAAG GGAGTGTGGT ACAAATGCTT GCCATATAAT
  GCTTTGCTAT TGCTCTCCTG GTTGGGTCAC CAATCTTTAG ACACTTAAAT TGTCTAAATG
  TAAAGAGAAT TAATGTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63456918	NES17003093	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T	T		T	T	C	T
ss147608111	ENSMUSSNP151291	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50205564					SNP	C	C	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63456918	NES17003093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36726423 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	63 bp upstream
Cpgi7034	CpG island 7034	1157 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	943 bp downstream
Tssr131078	transcription start site region 131078	902 bp downstream
Tssr131079	transcription start site region 131079	141 bp upstream
Tssr131080	transcription start site region 131080	182 bp upstream
Tssr131081	transcription start site region 131081	213 bp upstream
Tssr131082	transcription start site region 131082	488 bp upstream
Tssr131083	transcription start site region 131083	681 bp upstream
Tssr131084	transcription start site region 131084	727 bp upstream