rs50206372 SNP Detail

Summary

• ID
  rs50206372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46248318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCACCAG TGTGAGAGTA
  CACAACACAG CCAACATGCC TGGCAATTAT GACTGTAACC AACGGTGCTG TAAGGACAGA
  CAGACAGGCA CATGGGTGTA GGACAGTCTT TCTCATTTTG ATGTTGATTC ACAAGCTACA
  GTTGGGGTAA GACTGAGATG GTGCCAGCCG TCTTTGGATT TTCAGAGAAC TCAAAGGAAC
  R
  AAATGTCCTT CCAGGAGGCT TCTGGGACCC TAGGCTCTCA GTGGCCTCTG TGGACAGAGG
  CTATGTCTGT CAGATGTTAT AACTGGCTCA GGAGGTGACC TGTGGCCTAG GAGTCTACTC
  CATGCTCTGG GCATTGCCCT CCATTTGGGT GTGCAAAGCA GCAGGCCCCA CCTTGCATTG
  TAGAGCATGC CTATGGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61392176	NES16761226	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50206372					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61392176	NES16761226	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46248318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21707	CpG island 21707	1964 bp distal
Rr383308	regulatory region 383308	569 bp upstream
Rr678124	regulatory region 678124	421 bp proximal
Rr678125	regulatory region 678125	922 bp proximal