rs50206563 SNP Detail

Summary

• ID
  rs50206563
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64301420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA GAGGGGGTGT AAAGAGGGTA
  A
  GAGTCTGGAG AAGTTGCAGT GGAGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss149161848	ENSMUSSNP242304	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs50206563					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64301420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	within coordinates
Cpgi5774	CpG island 5774	474 bp proximal
Gm47513	predicted gene, 47513	within coordinates
Gm61554	predicted gene, 61554	within coordinates
Rr273318	regulatory region 273318	1581 bp proximal
Rr281559	regulatory region 281559	within coordinates
Rr403820	regulatory region 403820	1127 bp downstream
Rr403821	regulatory region 403821	within coordinates
Tssr120196	transcription start site region 120196	103 bp upstream
Tssr123017	transcription start site region 123017	1151 bp upstream
Tssr123018	transcription start site region 123018	858 bp upstream
Tssr123019	transcription start site region 123019	461 bp upstream
Tssr123020	transcription start site region 123020	417 bp upstream
Tssr123021	transcription start site region 123021	399 bp upstream
Tssr123022	transcription start site region 123022	329 bp upstream
Zfp367	zinc finger protein 367	407 bp upstream