rs50206820 SNP Detail

Summary

• ID
  rs50206820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118574794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCAACCT GCACAGTGGG
  TGATGCTGAC TGTCACCTTG ATCTTTGAAG GTCATTTCTC TGTTTGTTTG GTCTCCCGCT
  GCACCCCAGG ACTCACGCTG TCAATAGTCA CAGCCTCCCC AGCTCCAACC ACTCACATCC
  CGTCAGCCCA TTCTGTAAAT CCGGAATGCC AGGTGGAGTC CACACTACAC AGGAGGGCCC
  Y
  GTCTTTCAAT GGGCTCCTCC TGGTACTCCC AGTAAGCCAC TTCCCTGGCT TCAGGCCCCT
  ACCGGTGAAA GAAAAGCTCT GGCGCAGGCA GTTAGCCCAA GAGGTATGGG GGCTGCAGGG
  GGTAGATTTA CATTTTAAAA GCCCGAGGAA GGCCGAGGCT AGAGCCTCCT CCCCACCTGC
  CCGGGAGCTG CCGGTAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60830993	NES16019988	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50206820					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60830993	NES16019988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118574794 () rs orientation: forward

Symbol	Name	Function Class
Rr366840	regulatory region 366840	within coordinates
Rr618906	regulatory region 618906	992 bp distal
Rr618907	regulatory region 618907	within coordinates
Rr618908	regulatory region 618908	1386 bp proximal
Tssr48424	transcription start site region 48424	881 bp downstream
Tssr48425	transcription start site region 48425	756 bp upstream
Tssr48426	transcription start site region 48426	781 bp upstream
Tssr52899	transcription start site region 52899	1881 bp upstream