rs50207214 SNP Detail

Summary

• ID
  rs50207214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72533690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATTGTTTA TTAATTTTAT ATATAAGTAC ACTGTAGCTG
  TTTTCAGACA TACCAGAAGA GGGCATCAGA TCTCATTACA GATGATTGTG AACTACCACG
  Y
  GGTTGCTGGG ATTTGAACTC TGGACCTTCG GAAGAGCAGT CAGTGCTCTT AACTGCTGAG
  CCATTTCTCC AGCCTCCTAT TTTTTTTGAA AAAAAATTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133285568	ENSMUSSNP2025661	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321822101	CHEV_6_72506701	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50207214					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72533690 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	904 bp downstream
Tssr57143	transcription start site region 57143	878 bp downstream
Tssr57144	transcription start site region 57144	589 bp downstream
Tssr57145	transcription start site region 57145	549 bp downstream
Tssr57146	transcription start site region 57146	530 bp downstream
Tssr57147	transcription start site region 57147	627 bp upstream
Tssr57148	transcription start site region 57148	1966 bp upstream
Tssr61469	transcription start site region 61469	1082 bp downstream