rs50207954 SNP Detail

Summary

• ID
  rs50207954
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56301496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCGATG TGCATCTGTT
  AATATAATAT CATGAGCTTT GACTGGAGTG TTGTAGCTCA TGCTAGAGCA TCCCGACAGT
  CCAGGATGGC CTAGGGTTTC CTTGGACCAT TGATGTACCT GCTCTACAAA TTCCCTTTCC
  TTTCTGTTAG CACACTGTTC TATTAGGTCT CTAGTCTTTG GGTCATAGGA CAAGGTTCCC
  W
  GAAGAAACCA GTGCCTGAAC CCACTTGCTA CCCATCCTGA GCAGAGATGG ACACCACGAA
  ATCTCCCTCA TTGGTTTTTA AAAGATGCGG ATCAAACTGC TTTTTATACT ACGTTTTACT
  TAATAAAGCA GATAACTACT CTCCCTTTGG CTTAAACCTA CCTTGTCTCA CTGTGTACTG
  GAAAGAGGGA GAGAGGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52437169	NES15406607	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50207954					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437169	NES15406607	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56301496 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	within coordinates
Gm47682	predicted gene, 47682	within coordinates
Rr267727	regulatory region 267727	1296 bp distal
Rr267728	regulatory region 267728	within coordinates
Rr269550	regulatory region 269550	1446 bp proximal
Tssr113509	transcription start site region 113509	1549 bp downstream
Tssr113510	transcription start site region 113510	1499 bp downstream
Tssr113511	transcription start site region 113511	1463 bp downstream
Tssr113512	transcription start site region 113512	1450 bp downstream