rs50208088 SNP Detail

Summary

• ID
  rs50208088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98939280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTGCATAG AAGTTAGCCT CCAGCAAGAA CAAATATACC
  CCAAGGTCCG GGTCACTGCT TTGTGGCTGA CAATCATAAG ATCTGCCCTT GAGCGCAAAT
  R
  GAAAGTCTGG GCTCAGAATT GCTTCGGAGG TCTGATGGGA CAAATGGACA GAGCCTGAGA
  GGTACGAGTG CGTCTGAGGG TGGCTGTGGC TTCCAGCCTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52581854	NES15643394	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50208088					SNP	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52581854	NES15643394	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98939280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	1029 bp distal
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	within coordinates
Rr509290	regulatory region 509290	871 bp distal
Rr509291	regulatory region 509291	893 bp distal
Rr509292	regulatory region 509292	101 bp distal
Rr509293	regulatory region 509293	1053 bp proximal