rs50209088 SNP Detail

Summary

• ID
  rs50209088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172893954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA AACCCGGCTC CTGCACAGAC
  Y
  CCATGGCCCC GTGCCTCTGC CTGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148328607	ENSMUSSNP3548460	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50209088					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172893954 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	1228 bp upstream
Gm74627	predicted gene, 74627	within coordinates
Rr367393	regulatory region 367393	1779 bp upstream
Rr407004	regulatory region 407004	within coordinates
Rr571825	regulatory region 571825	1901 bp distal
Rr571827	regulatory region 571827	1239 bp distal
Rr571828	regulatory region 571828	849 bp distal
Rr571829	regulatory region 571829	948 bp distal
Rr571830	regulatory region 571830	1567 bp proximal