rs50209147 SNP Detail

Summary

• ID
  rs50209147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25189188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG AATGATCAGA TTCATAGAGA
  Y
  AGTAGACTGA GGGGTGCCAG AGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148110847	ENSMUSSNP1905154	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321497032	CHEV_5_24490008	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50209147					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25189188 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1500035N22Rik	RIKEN cDNA 1500035N22 gene			1652 bp upstream
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608456	regulatory region 608456			1226 bp distal
Rr608457	regulatory region 608457			181 bp distal
Rr608458	regulatory region 608458			573 bp distal
Rr608459	regulatory region 608459			436 bp distal
Rr608460	regulatory region 608460			1128 bp proximal
Rr608461	regulatory region 608461			1680 bp proximal
Tssr45452	transcription start site region 45452			1650 bp upstream