rs50209168 SNP Detail

Summary

• ID
  rs50209168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72688152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTGTCT TGGTGGTGCA
  TCCTCTTAGC CTGTACTGTA TTCACGGCAA TTATGTGACA GCCTGGAAAG AGTCCTTGCG
  CAGCAATATC GCATGGGGGG GGGTACTTTT AATGCAGGGA GGGTCCTTGC AGAGCACGAG
  TGGAAGTGGA TGGGTGGCAC TGGGAACAAG CTCTGTAGAC AGGAGAAACC TGTTTATCTT
  Y
  ACACTCCAGG GAGGCCATCA GTCTTCCGTG ACAGCAGTAC TGTAGGGAAC ACATTCCTGG
  AGGGAGATAT GGGTTCCCCT GGCCAAGTGG CCTTCTCCTG AGGAGCAGAG GGTCTAATGA
  GATAAAATGG GCCAGAGCAG CAGGAAGCCA GTTCCATCTT TCCCCCAAGT CTTCAGAAGA
  GACTGATCAA AGGGGAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61421313	NES16805470	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50209168					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421313	NES16805470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72688152 () rs orientation: forward

Symbol	Name	Function Class
Gm27204	predicted gene 27204	1662 bp upstream
Gm68819	predicted gene, 68819	within coordinates
Rr197252	regulatory region 197252	752 bp distal