rs50209966 SNP Detail

Summary

• ID
  rs50209966
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31896365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA GCACACAGAT CCCCTGCGAC
  S
  GGCAGGGACT GGAGCAGGAT TTGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145462622	ENSMUSSNP3863996	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
ss325359834	CHEV_17_31814336	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50209966					SNP	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31896365 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	540 bp upstream
D17Rua3	DNA segment, Chr 17, Rutgers University 3	1124 bp proximal
Gm50222	predicted gene, 50222	within coordinates
Tssr143680	transcription start site region 143680	533 bp upstream
Tssr143681	transcription start site region 143681	1533 bp upstream
Tssr147305	transcription start site region 147305	718 bp downstream
Tssr147306	transcription start site region 147306	740 bp downstream
Tssr147307	transcription start site region 147307	790 bp downstream
Tssr147308	transcription start site region 147308	1107 bp downstream