rs50210050 SNP Detail

Summary

• ID
  rs50210050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:53872327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGTTTC TGGCCAAGAG
  CATAAGCATA CCACCCCTGG CCCTCGGGGC ATTCTCCACT TTTCTCTGAA GGTTATATAC
  ATCTCCAAAC CACCCTTTTG TACAGCTACT TACACCCCAC CTAGGCTCCA AGTGCAGAAC
  AGGCTTACTT TCTGCACTCT AAAAATGAGC CAGTTTTTCT CTTCCTTCTG TTTACCTTTG
  R
  GCAGCTGCCA GAATTTACAG TTCACTATAA TACAATGGGC CTCAATCTTC CTTCTGAATC
  CACTTAAAAA TTCTTAGATA AAGGACACTA AGAACATATA AGAGAACCTG GATTTCCCCA
  GTAAGTAATG TTTTAATGAC ATTATTGTAG AAACTTGAAG AACAAACAAC CAGAGGACAG
  TGATGTAAAA CCTGAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62790776	NES17344593	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50210050					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62790776	NES17344593	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:53872327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9316	CpG island 9316	1443 bp proximal
Kat2b	K(lysine) acetyltransferase 2B	1562 bp upstream
Rr339992	regulatory region 339992	673 bp proximal
Tssr5169	transcription start site region 5169	600 bp upstream
Tssr145221	transcription start site region 145221	1437 bp upstream
Tssr145222	transcription start site region 145222	1677 bp upstream
Tssr145223	transcription start site region 145223	1960 bp upstream
Tssr145224	transcription start site region 145224	1989 bp upstream