rs50210583 SNP Detail

Summary

• ID
  rs50210583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72181723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC CTTACAGATC CGACTTACGA
  Y
  GAAGTATTCT TATAAATACA TCGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136620081	ENSMUSSNP6198351	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323002095	CHEV_9_72122248	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50210583					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72181723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22014	CpG island 22014	74 bp proximal
Gm27253	predicted gene 27253	within coordinates
Rr197186	regulatory region 197186	123 bp distal
Rr206702	regulatory region 206702	77 bp proximal
Rr368823	regulatory region 368823	914 bp upstream
Tssr85968	transcription start site region 85968	432 bp upstream
Tssr85969	transcription start site region 85969	460 bp upstream
Tssr85970	transcription start site region 85970	500 bp upstream
Tssr85971	transcription start site region 85971	525 bp upstream
Tssr85972	transcription start site region 85972	578 bp upstream
Tssr85973	transcription start site region 85973	1046 bp upstream
Zfp280d	zinc finger protein 280D	419 bp upstream