rs50210671 SNP Detail

Summary

• ID
  rs50210671
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82958906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC TGAAACATTT CCATCAACTG
  A
  GACAATTGTT CAAATATATG AATCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132466418	ENSMUSSNP3737110	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50210671					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82958906 () rs orientation: forward

Symbol	Name	Function Class
D11Pas76	DNA segment, Chr 11, Pasteur Institute 76	within coordinates
Gm20234	predicted gene, 20234	93 bp upstream
Rr452895	regulatory region 452895	829 bp distal
Rr452896	regulatory region 452896	495 bp distal
Rr452897	regulatory region 452897	413 bp proximal
Rr452898	regulatory region 452898	1001 bp proximal
Slfn2	schlafen 2	within coordinates
Tssr103640	transcription start site region 103640	1646 bp downstream
Tssr103641	transcription start site region 103641	1544 bp downstream
Tssr103642	transcription start site region 103642	318 bp upstream
Tssr103643	transcription start site region 103643	1198 bp upstream
Tssr103644	transcription start site region 103644	1247 bp upstream
Tssr103645	transcription start site region 103645	1428 bp upstream
Tssr103646	transcription start site region 103646	1497 bp upstream
Tssr103647	transcription start site region 103647	1666 bp upstream
Tssr103648	transcription start site region 103648	1736 bp upstream
Tssr103649	transcription start site region 103649	1781 bp upstream
Tssr109639	transcription start site region 109639	1257 bp upstream
Tssr109640	transcription start site region 109640	789 bp upstream