rs50211694 SNP Detail

Summary

• ID
  rs50211694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59040949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCCTGC CTCTTATCTC
  AACATACAGA GCAACTCTGT CTTCACCACA ACAGCAAGAA GGAGCTGCCA CTTATCTGCC
  TCCCCCGAGC CACCAGCGGA CATTTCCTCA CTACCATCCG GGCACTGCTA CTTCAGGCCC
  TTGGGTGCTA CCACAGCTCG GGACCACAGC TGCTGCTTGT TGCTTTCTCC TACCTAGTTC
  Y
  TGAGCTGTGA GGGCAGGCAT GGTCTATTAG TGAGGCTTTG ATCTCTGGTG GTTACCACAT
  TTATTTTTAT TGCATGGAAT TGGAAGAATA TAAATGTTTA AGGCATTCAT TTTTTTTCTT
  CCACATTACT TAGTATATGC GTTTTGTAAG TGACACTCCT GCATGTTTGT TTCTCTTTCC
  TGTTCGTGTA ATATGTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415171	NES15910146	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50211694					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415171	NES15910146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59040949 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Rr577324	regulatory region 577324	1030 bp distal
Rr577325	regulatory region 577325	within coordinates
Tssr29228	transcription start site region 29228	1662 bp downstream
Tssr29229	transcription start site region 29229	1210 bp downstream