rs50211747 SNP Detail

Summary

• ID
  rs50211747
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGGTAC CACATTGTAT
  CTTTTTGCCC ACCATCTTTA CTTGCAAATG ATCTGGTTCA AGGTCTCTGG CTTCTGCTAC
  ACTATAGATA CTGGCTCCTC ACCTGGACTC CTCTTGGATA CTATGTTGAG GCCCTGTGTT
  TTAGAGATCC TGCAGCTTTG GATCTGTAGG ACTGGCCCCT TCACATGTTC TAGCAGTTCA
  W
  AGATGGGGTA GATGTTGGGG TGGGCCAACT CAAAGTACTG GGTCTGGGCC TGGATGGAAG
  CTGAGTTGGT CAGCTTTTTG CCCAGGCGAG GGGTAGGGCC AGCTCTTCCA GTTGCTGCAT
  CTGATGAGAA ACAGGGCCAG CTCTGCACAG CTCTCAGATG TCAACATGGC TTCAGGTGAC
  AGTCTAGACC AGGGATGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145647220	ENSMUSSNP2757432	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50211747					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365586 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1827 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	298 bp downstream
Cpgi19579	CpG island 19579	1704 bp proximal
Rr653308	regulatory region 653308	1414 bp proximal
Tssr68503	transcription start site region 68503	1684 bp upstream
Tssr68504	transcription start site region 68504	1727 bp upstream
Tssr68505	transcription start site region 68505	1759 bp upstream
Tssr68506	transcription start site region 68506	1790 bp upstream