rs50212276 SNP Detail

Summary

• ID
  rs50212276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTGGTA AGTGGTATTG
  ACGGGTGACA GGGTAGACAC GTCCACATAG AAAAACTGGA TCTCAGACTC ATTCTTGGTG
  GGGGGCTGAC ACAGAGTTCG TTCCACTTTT TGGTAGAGGT ACTTCCGCTG ATATCTATGG
  TCCAAGACAG AGAAGAGTGT GACTAGTCCC AGCCAGCCTG AGTTCTTCCT ATCAGGTCCC
  Y
  ATATTTCCCA TTCCCTGGGC TGACAAAGTT ACCCTCCTGC CACTGGGCTC AGGGAGAAGG
  GAGAAAAACA AAAAGGTTCC CCGGGTGAGG GTCCCTGAAA ACCTGGCAAG GATGCCCCTC
  CCTACATCCC CAGGTCTTAC TCACAGTCCT CGAAGGATTA GGGGCACCTG GAAGGACACA
  ACAGCCTCCT TCTGGCGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136420888	ENSMUSSNP6248748	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50212276					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864278 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	1121 bp upstream
Cpgi21698	CpG island 21698	1453 bp proximal
Gm68914	predicted gene, 68914	1728 bp downstream
Rr678012	regulatory region 678012	631 bp proximal
Rr678013	regulatory region 678013	1987 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	96 bp upstream
Tssr89293	transcription start site region 89293	693 bp downstream
Tssr89294	transcription start site region 89294	1986 bp downstream