rs50213782 SNP Detail

Summary

• ID
  rs50213782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:83183729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGCACATG GGGATGCACA CAGGGCTCAC TCTGGATGGG
  GTTTGGACAG ATCTCTCTGC TACTAAGTTA GTATTGATGC TACAGTGTGT GCCGCCATGC
  Y
  GGCTCCGGTG TGCTGGGGAA GGCTGGCTGC CAGTGTCACA GGAGCCTCCT CCCCTCCCAG
  AGGCACCAGT CTCTGTGTTG TGATGATGGC ATCTGTCAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63574367	NES17025305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50213782					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63574367	NES17025305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:83183729 () rs orientation: forward

Symbol	Name	Function Class
Arfgap3	ARF GTPase activating protein 3	211 bp downstream
Rr506669	regulatory region 506669	997 bp distal
Rr506670	regulatory region 506670	658 bp distal
Rr506671	regulatory region 506671	490 bp distal
Rr506672	regulatory region 506672	493 bp proximal