rs50215924 SNP Detail

Summary

• ID
  rs50215924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171073441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG AAGCCACAAA ATAGCAGACC
  Y
  GCTTGCTACA CTAGCCAGGC AGCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss119996762	PARCsnp_1.12458	PARC_SEQ	INBRED	f	SNP			C	T
ss119998510	PARCsnp_1.01523	PARC_SEQ	INBRED	f	SNP			C	T
ss146158205	ENSMUSSNP2400708	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320117538	CHEV_1_173176003	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50215924					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171073441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	1012 bp proximal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	479 bp upstream
Rr423259	regulatory region 423259	1240 bp proximal
Rr423260	regulatory region 423260	1267 bp proximal
Rr423261	regulatory region 423261	1794 bp proximal
Tssr10000	transcription start site region 10000	1480 bp upstream
Tssr15023	transcription start site region 15023	1224 bp downstream