rs50216086 SNP Detail

Summary

• ID
  rs50216086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:14554141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCCCACC CCCACCCCCA GCTTCTGAGT GTTCCAGCAT
  CACCGTGCTT TCTGCCTCTG CTCAGAGGAG TTCTTTTCTC TGCGAAGCAA TCTCTTGCTG
  Y
  CAGCCACTCA AGTCTGTCAC TGAGCCACTG GAATCTCAGG TTTCCCAGGC AGAGTGAGGA
  GTGTTGGGCA GTGGCCTATG GTGCCTGCGG TGCTGCACAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60690277	NES16226460	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50216086					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60690277	NES16226460	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:14554141 () rs orientation: forward

Symbol	Name	Function Class
Amotl1	angiomotin-like 1	within coordinates
Gm34263	predicted gene, 34263	804 bp upstream
Rr674191	regulatory region 674191	762 bp distal
Rr674192	regulatory region 674192	239 bp proximal
Tssr2784	transcription start site region 2784	764 bp upstream
Tssr83841	transcription start site region 83841	802 bp upstream
Tssr88175	transcription start site region 88175	678 bp downstream
Tssr88176	transcription start site region 88176	710 bp downstream