rs50216247 SNP Detail

Summary

• ID
  rs50216247
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34584133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAAAATT ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC GCAGAGGCAT GCATGCACAC ACATGTACAT
  TTGTATACAC ACAAAGCAGA GCAAAAGAAA CAGAGAGGCA GAAAGCAAGA AAATCAATTG
  ATGTATCAGT CAATCAGTCA ACCATAGCCC CCTATATTCT TCAAAGAGGG AACAACCTTG
  W
  GAGTGTGCCA TTTGCCTGAT TTAACAACTT CTGTTACTTA GAGATTTTCT GCAGTGCTAA
  AGCAACATCT CTTATATCAA GGCACAATGC CTAAGTGTCC AGCCCACCGT TTCCTATCCA
  TCAGAGCAAA GAAGCAGAAG GATGCAGGCC CATCCTCCTT GGGCTTGTAC ATTAGCATTC
  CAAGTCCCAC TAGACCAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146341858	ENSMUSSNP4757674	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50216247					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34584133 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	1237 bp upstream
Rr405932	regulatory region 405932	779 bp upstream
Rr546756	regulatory region 546756	747 bp proximal
Rr546757	regulatory region 546757	1248 bp proximal
Tssr156136	transcription start site region 156136	790 bp upstream
Tssr156137	transcription start site region 156137	1194 bp upstream