rs50216885 SNP Detail

Summary

• ID
  rs50216885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:193909611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGACAGAA ATAGGATTTG
  ATTTCCTTTG CAGAAAGGAG TAATGCTTAC AAATATAATA AAAGAGAAAA ATAAGTGTGT
  CAGGTTTTTA TAATTCAACT TGTAAAATTC AGAATGATTA GTTTTTGAAG AGGGCAATTA
  GTCCTCTTTT GCATATTCAT GAGGATTTAA TGAAATGGGG TTGAGTTTTC ACCATTCTTT
  W
  CTGGTTACCT CCTTTTACAA CTCTCCCCCC ACCACACAAA CTAAAAACAT ATCTGATACC
  CATCAAAGGA AGCCTCCTTC CACTCAATTC ACGGAACAGT TTTTCTGCTG ATTGCTACCA
  AGAGATGCCC AGGGTTCTCT TTTTAAAATT ACTTATTGAT AAAGACACCA CAGCAATAAT
  TTAGGTATGT GAGGTGTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60365274	NES15864956	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50216885					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365274	NES15864956	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:193909611 () rs orientation: forward

Symbol	Name	Function Class
Rr914	regulatory region 914	within coordinates
Rr426629	regulatory region 426629	1213 bp distal
Rr426630	regulatory region 426630	within coordinates