rs50217218 SNP Detail

Summary

• ID
  rs50217218
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24569611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT TGGAAAAAAA GTGGTGGTTG
  G
  GGGGGAACCG CAACCTTTGA ATACG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145351399	ENSMUSSNP5272623	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325330807	CHEV_17_24487582	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50217218					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24569611 () rs orientation: forward

Symbol	Name	Function Class
Abca3	ATP-binding cassette, sub-family A member 3	1386 bp upstream
Abca17	ATP-binding cassette, sub-family A member 17	within coordinates
Cpgi8716	CpG island 8716	186 bp proximal
D17Jcs14	DNA segment, Chr 17, John C. Schimenti 14	1702 bp distal
Rr405082	regulatory region 405082	1081 bp upstream
Rr523280	regulatory region 523280	232 bp proximal
Rr523281	regulatory region 523281	382 bp proximal
Rr523282	regulatory region 523282	582 bp proximal
Rr523283	regulatory region 523283	1267 bp proximal
Rr523284	regulatory region 523284	1420 bp proximal
Rr523285	regulatory region 523285	1470 bp proximal
Tssr143021	transcription start site region 143021	1300 bp upstream
Tssr143022	transcription start site region 143022	1317 bp upstream
Tssr143023	transcription start site region 143023	1380 bp upstream
Tssr143024	transcription start site region 143024	1400 bp upstream
Tssr146725	transcription start site region 146725	416 bp downstream
Tssr146726	transcription start site region 146726	435 bp downstream