rs50218073 SNP Detail

Summary

• ID
  rs50218073
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28854941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCAAGAG GCGGGCAGCC
  TGGAGCTCAG AGCAAAGAAA CCCTAAAAAG AGGAGTAGAT CCCTACCCAA CCAGAACCTT
  GGCCCTTCCC CCAGAGTAAG CCTCACCCAC CGACAATGGG GGATGTGGGT CCACTTCAGA
  ACCACCCAAC TGGCGTTTAA CTCAACGCAT TAAAGTTTTC AGAGGCCTCT GTCAGAATTC
  W
  AGCCAAGCCT TAATTAACCC TAGCCTATCT ACCTGCGGCC TTCAAGCTCG CCGCAAAGCT
  TTGGCCACAC CCACGGGAGT CCAGTCTGAG CGTCAGAGCC CGCCCCATTC AGAGGCCCCG
  CCCACCGCCA CCACCCTGGG CCTTCCAAGC TCGCTCACGC AGCAGACGCA GGCCGCCGCC
  GGGCTCCCGC AGCACGGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60987106	NES16140767	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50218073					SNP	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987106	NES16140767	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28854941 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	164 bp upstream
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	937 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	1555 bp downstream
Rr400219	regulatory region 400219	596 bp upstream
Rr644490	regulatory region 644490	1288 bp distal
Rr644491	regulatory region 644491	within coordinates
Rr644492	regulatory region 644492	186 bp proximal
Rr644493	regulatory region 644493	657 bp proximal
Rr644494	regulatory region 644494	680 bp proximal
Rr644495	regulatory region 644495	805 bp proximal
Rr644496	regulatory region 644496	1794 bp proximal
Tssr65599	transcription start site region 65599	127 bp upstream
Tssr65600	transcription start site region 65600	155 bp upstream
Tssr65601	transcription start site region 65601	228 bp upstream
Tssr71610	transcription start site region 71610	81 bp downstream
Tssr71611	transcription start site region 71611	106 bp downstream
Tssr71612	transcription start site region 71612	201 bp downstream
Tssr71613	transcription start site region 71613	420 bp downstream
Tssr71614	transcription start site region 71614	447 bp downstream
Tssr71615	transcription start site region 71615	656 bp downstream