rs50219607 SNP Detail

Summary

• ID
  rs50219607
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167432408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC AGAGAAGGTG CAGAGAGAGG
  A
  GCCTCATACT GGTGAGGCTG TCAGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148264311	ENSMUSSNP6491983	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50219607					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167432408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12749	CpG island 12749	1304 bp distal
Gm11475	predicted gene 11475	907 bp upstream
Gm11476	predicted gene 11476	within coordinates
Gm31619	predicted gene, 31619	1025 bp upstream
Rr397510	regulatory region 397510	844 bp downstream
Rr570648	regulatory region 570648	1083 bp distal
Rr570649	regulatory region 570649	694 bp distal
Rr570650	regulatory region 570650	1029 bp distal
Rr570651	regulatory region 570651	within coordinates
Rr570652	regulatory region 570652	841 bp proximal
Tssr769	transcription start site region 769	1487 bp downstream
Tssr21821	transcription start site region 21821	1386 bp downstream
Tssr21822	transcription start site region 21822	929 bp downstream
Tssr21823	transcription start site region 21823	872 bp downstream
Tssr21824	transcription start site region 21824	250 bp upstream
Tssr27780	transcription start site region 27780	1031 bp upstream
Tssr27781	transcription start site region 27781	29 bp downstream