rs50220357 SNP Detail

Summary

• ID
  rs50220357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70896780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATAATTA AATGACCTGA
  TTAGCTGGAT GGCATCATAT GAGCCAAACT GTCTTTCAGG TATTGCCTTC ATAGTCATCT
  ATCTCTCTGC CTTGCCTTGG CAACAGCATA CTACTATGTG GCTAGTCTTT GTAAGACTCT
  TGTGGATGAG AGATAAGAGG TAGAAAAGAA ATAAATGCCA TTCTCTCTTG CTCTGTCAAG
  R
  AGTCAACTAA TAAAACTAGC CTGCTCATTC TTGTGTTTCA TTTATGCTGT GTGCAATCAA
  GCACACTCAT CGGACCTATG TATCTTGGTT GCAAAAAGAG ATATTCAGCT ATGGATTTTC
  TAAGAGGTCA TGAGGGTACA ACACAGATAA TACAAACGAT TGAATATCAA GTACAGATGT
  GACTTCATTT GTAGATCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52652476	NES15473958	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50220357					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652476	NES15473958	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70896780 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Rr284828	regulatory region 284828	1637 bp distal
Tssr123156	transcription start site region 123156	1421 bp downstream