rs50220560 SNP Detail

Summary

• ID
  rs50220560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80036495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTGAAG GCCTGCTCTG
  CATTCTCAAA ACCAGCAGGA AGCTGGATGA TGGGGACATT GGGATTTAAG GCCAAAGGAG
  GGACCATCAG GGGACCCAAG AAGGTATCAC ATACGGTGAT ACATGTCACC GTGAGGACTC
  AGTAGCCATC CACTCATGGT GTCCCTGACT CCCTTCCTCC TCTTAGGATT TTCTTAGGGA
  Y
  CAGCTTGTAA AACATAAAAC AGCTGATAAG TAGTTGGTGC ACCTCCACGC CCCACTCTAG
  CCCCAACTGT CCGGTGACAG TCTTGTTTCA TCCAGAGCCC CGTATTTACA AATTGTTTTG
  AAGCTACCAC AGACATTGTG CCAAGATAAT CTAAAGATTT GCTATAGACC CCTGAGGAAA
  CGTCTCATTA AACTCAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569819	NES17023160	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50220560					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569819	NES17023160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80036495 () rs orientation: forward

Symbol	Name	Function Class
Rr304352	regulatory region 304352	295 bp distal
Rr308002	regulatory region 308002	106 bp proximal
Rr314587	regulatory region 314587	1706 bp proximal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates