rs50221460 SNP Detail

Summary

• ID
  rs50221460
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171017687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTA ATCTGAGCCA GTGAGTTCTA
  M
  GTCAGCCTAG GCTAGCGATG CAGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss119995962	PARCsnp_1.12058	PARC_SEQ	INBRED	f	SNP			C	A
ss119997556	PARCsnp_1.01047	PARC_SEQ	INBRED	f	SNP			C	A
ss146156071	ENSMUSSNP4789674	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320116991	CHEV_1_173120249	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50221460					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171017687 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	within coordinates
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423235	regulatory region 423235	1482 bp distal
Rr423236	regulatory region 423236	447 bp distal
Rr423237	regulatory region 423237	33 bp distal
Rr423238	regulatory region 423238	207 bp proximal