rs50225136 SNP Detail

Summary

• ID
  rs50225136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61762451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAACATT GCAGGAACTT
  ATCACGGTGC TCCTAGATCT GTGTTCTCAG GACCAAGCGG GTCAAAGAAA ACTCAAAGTC
  CTCTGCTACT CAGGAAGTTC AAAGCCAACA GGAATGGGTG AGATCCCATC CTTAAAAGAA
  TAAAAAAATT GCAGGCTGGG GGATATGAGC AACAGAAGTG TGAGAACCAG AGAGAAGCCT
  Y
  CAACCCTGTC CTGCCCCAAC CCCGGAAGTC CTCATCCTAC AGCTTTGTTC CCAAGGCCAC
  AGCTGAACTG CTGCCACCCA TCATCCCCTG AGGGCAATTT CAGTGACCAC TTTCCTGTAG
  AGTCCATGGA AGTGAACTCC CTGTCTGGCA GGATGCTGAC AGCCATCGCT GCCTTGCCCT
  TTGGTGCAGA AACTGCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61280631	NES16779743	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50225136					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280631	NES16779743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61762451 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr223137	regulatory region 223137	672 bp distal
Rr384795	regulatory region 384795	1518 bp upstream