rs50227992 SNP Detail

Summary

• ID
  rs50227992
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11451149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTGGGA ATCTGGCTTT
  TTTCTTACAT TTTGTCTGTT GGGTCCTCCC TCCTCTCTCT CTCTCTCTCT CCCTTGCAGT
  TGATATACAA CACTGGGTTG TTCCCATCCT GGAGTTTTAT ACTGGCTTCC CTGATGACAT
  CACTGAATGG TGCTGCGGCT CACCCCTCCC GTTTTCATTT TCCTTAAGCG GATACTTGAG
  S
  CTAGATGTGT AAGATTGGTT TCGTGTCACT GATGGTGTGA TTCTGGTTGG ACTGTTTCCT
  GTCAGCTCTC CTGCAAACTC TGCTGTCTCT TTATTCATCC ATCTCTTGTT ACTCCCTAGG
  CCGGTTATTC TGTGTCTCCA TCAGGTTAGT GGTTCCTCTT CTTGATGCTT CTGTAGTGCT
  GTGAATAAGA AGGACAGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52596350	NES15695619	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50227992					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52596350	NES15695619	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11451149 () rs orientation: forward

Symbol	Name	Function Class
Gm59955	predicted gene, 59955	110 bp upstream
Snx29	sorting nexin 29	within coordinates
Tssr137107	transcription start site region 137107	1200 bp downstream
Tssr140027	transcription start site region 140027	108 bp upstream