rs50228784 SNP Detail

Summary

• ID
  rs50228784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12275974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGAGAC AGGGTTTCTC
  AGTGTAGCCC CGGCTGTCCT GGAACTCACT TTGTAGACCA GGCTGGCCTC GAACTCAGAA
  GTCCGCCTGC CTCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCATGC ACCACCACGC
  CCGGCATAAC ACTTTTTAAT ATAGAATTTT AGTATATAGT ACAGTTTGGC TTTGAATTAG
  Y
  CTCCTGTGTC TCACCAAGAC CTGCAAAACA CAACATTTCT TTTTTCAGAT TTTAAAAACA
  AAGGATAGTT CAGTAAGGTC AGTGATAGTT AAAGAGATTA AAAGCAGATG TATCTAGAAA
  AATAAAAAGA TATATAGAGC CAGGAGTATA GGGGTAGTGG TACAGGCTCA TAATCCCAGC
  ATTTAAGAGA ATGAGGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61743554	NES17669045	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50228784					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61743554	NES17669045	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12275974 () rs orientation: forward

Symbol	Name	Function Class
Gm47021	predicted gene, 47021	818 bp upstream
Rr270765	regulatory region 270765	427 bp proximal
Rr270766	regulatory region 270766	1427 bp proximal
Rr387989	regulatory region 387989	within coordinates
Tssr121434	transcription start site region 121434	884 bp upstream