rs50228819 SNP Detail

Summary

• ID
  rs50228819
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100306977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCATCTG TAATGGGATC
  CGATGCCCTC TTCTGGTGTG TCTGAAGACA GCTACAGTGT ACTTACATAT AATAAATAAA
  TAAATAAATC CTTTTTTAAA AAAAGGAGAG AGAGAGAGAG CAAGAGAAGG GGGACGTGAG
  AGCTTAATGA ATGCTCAAAA GGACAGGGAG AGCCCAGCAA GGGCCTGACA AGGAGAGCCC
  M
  GCAAGCATCC AAGATAGCCC ACGAAGTCCA AGAGTCCATC CACAGCAGTA ACAATAACAA
  CAATGAAAAT TTGTTTTTCA GCCAGGGTAA AACTGTAGCT CACCTTAAAT CCAGCCACTG
  CTCCAGACTG CAAATCAGAT TCGATGTTTC CTGGGTCTAG GTAGGCAATG CTCATAAGAA
  AGCCAGGCCC CGTGAACGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148475037	ENSMUSSNP6833667	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss325083090	CHEV_15_100239527	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50228819					SNP	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100306977 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	1514 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	1063 bp downstream