rs50228892 SNP Detail

Summary

• ID
  rs50228892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171978806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA CTTGGAAACA GATGCAGGTG
  R
  ATCTCTGATT TTGAGGCCAG CATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120006888	PARCsnp_1.17522	PARC_SEQ	INBRED	f	SNP			G	A
ss120009760	PARCsnp_1.07147	PARC_SEQ	INBRED	f	SNP			G	A
ss146182891	ENSMUSSNP5496059	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320122965	CHEV_1_174081370	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50228892					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171978806 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				Noncoding-Transcript-Variant
Rr372457	regulatory region 372457			1487 bp downstream
Rr423471	regulatory region 423471			1390 bp distal
Rr423472	regulatory region 423472			1106 bp distal