rs50230324 SNP Detail

Summary

• ID
  rs50230324
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45204457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA GTGAGTTAAC AGCCCTAGAA
  T
  TTAACCTCAG TCCCTCCCTC TCATC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148077482	ENSMUSSNP1951780	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss325166171	CHEV_16_45384207	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50230324					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45204457 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr4884	transcription start site region 4884	1401 bp upstream
Tssr4885	transcription start site region 4885	1356 bp upstream
Tssr4886	transcription start site region 4886	1026 bp upstream
Tssr141220	transcription start site region 141220	1485 bp upstream
Tssr141221	transcription start site region 141221	1461 bp upstream
Tssr141222	transcription start site region 141222	1341 bp upstream
Tssr141223	transcription start site region 141223	1327 bp upstream
Tssr141224	transcription start site region 141224	1304 bp upstream
Tssr141225	transcription start site region 141225	1248 bp upstream
Tssr141226	transcription start site region 141226	1212 bp upstream
Tssr141227	transcription start site region 141227	1177 bp upstream
Tssr141228	transcription start site region 141228	1136 bp upstream
Tssr141229	transcription start site region 141229	1120 bp upstream
Tssr141230	transcription start site region 141230	968 bp upstream
Tssr141231	transcription start site region 141231	867 bp upstream
Tssr141232	transcription start site region 141232	825 bp upstream