rs50230920 SNP Detail

Summary

• ID
  rs50230920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28855725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCG TGCGAAGGCG CTTCCACGCT
  Y
  CTATTGGCTT GGTCGCGCGC CACGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60987103	NES16140770	PERLEGEN	MM_PANEL2	f	SNP		C		C	C	T	C
ss148642742	ENSMUSSNP6848703	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50230920					SNP	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987103	NES16140770	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28855725 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	within coordinates
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	72 bp upstream
Gm73440	predicted gene, 73440	153 bp downstream
Rr400219	regulatory region 400219	within coordinates
Rr644491	regulatory region 644491	232 bp distal
Rr644492	regulatory region 644492	577 bp distal
Rr644493	regulatory region 644493	within coordinates
Rr644494	regulatory region 644494	83 bp distal
Rr644495	regulatory region 644495	21 bp proximal
Rr644496	regulatory region 644496	1010 bp proximal
Tssr65599	transcription start site region 65599	632 bp downstream
Tssr65600	transcription start site region 65600	609 bp downstream
Tssr65601	transcription start site region 65601	546 bp downstream
Tssr71610	transcription start site region 71610	684 bp upstream
Tssr71611	transcription start site region 71611	669 bp upstream
Tssr71612	transcription start site region 71612	570 bp upstream
Tssr71613	transcription start site region 71613	344 bp upstream
Tssr71614	transcription start site region 71614	305 bp upstream
Tssr71615	transcription start site region 71615	90 bp upstream