rs50231128 SNP Detail

Summary

• ID
  rs50231128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3841146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGCAGA TTTCTGAGTT
  CGAGGCCAGT CTGATATCTA GAGTTGAGTT CCAGAACAGC CAGGGCTATA CAGAGAAACC
  CTGTCTAGAA AAAAAACAAA AACAAAAACA AAACAACAAC AACAAAAAGA AAAAAGAAAA
  TATCCCGGAA CTTATACCTT TCCCCAGCTT CCCAGAGCAC CCCGAGGCTC TCTCCTCTGT
  R
  TGTGCCTCTG ACCTATCCAT TCCCAATCCA GACCCCTGGA TCACCTTCAT CTAACCTCAG
  CCCATCTACA CTGGCCCAGG TCTAACCTAG GCGCAGTGCT CCAGAGCAGT GGAACCCCAC
  ACTTCCCAGA CACCAGTCAC ATCCCCTTCC TCCCCAGTTC TGTCTCATGT GGAACAGGGC
  TGGCAGGGCC AGATCTGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61337750	NES16944876	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss323872812	CHEV_12_3791146	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50231128					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337750	NES16944876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3841146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4361	CpG island 4361	779 bp proximal
Gm60243	predicted gene, 60243	1452 bp downstream
Rr403217	regulatory region 403217	673 bp upstream