rs50233345 SNP Detail

Summary

• ID
  rs50233345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGCATC TTGACCAGTG
  AGGTTGTAAT TCTGTTACAC AATGAAAAGA ATTTTAATTC AAGAAAAAAC TGTTGACACA
  ACTCTCCCAG TTTCTCATAC TAAGCCACAA CCTCAAAGAT GAAAATATTC TCCCAAAACC
  TCCAGTTTCG TACCAAAGAC TTAGAGCTTC TAGAGGCAAT CTGAAGCACT TTATGTAACT
  R
  CCACTTATTC TCACTTAATC CCACTGCAGA GGAGTTTGCA GATTTGATGG ATATCCTTTT
  CAGAGGCAAT AGTCCTGATT AGTCCTGCTG GACCACCTCT GCGGCAGCTT CTAGAGCGCC
  ACCAACTGGC ACAACAGCCT TGGTGCACAG GGACCCTCTC CAGCCCTGGA CAAGGAGACT
  GCACTCTCAG AAAGATTCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137758503	ENSMUSSNP7084620	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50233345					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766757 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	within coordinates
Rr263732	regulatory region 263732	within coordinates