rs50233789 SNP Detail

Summary

• ID
  rs50233789
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117550156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAATTGCT GAGCCATCTC
  TCCAGCCTGT GATGCTTGCC TCTGAGTGCC ACCACTCCTG GCAAATAATG TTGTTCTTAA
  TGCCACATCC CTGCTAAGAG ATGAAAACAC TTGGGTGTCT TTACAATTTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTT AACGCTGAAC CACACCTAGG GTCCCGAGGC CCAGTTCTTG
  K
  CCTGAGATTC TCCCTAGAAC AATGCAAACT CATCTGATAT CATTACCATA GAAACTCTTA
  AAGCCATGTC TTAGTTACCT TTCTATTGCT GAGGAGAGAC GCCATGACCA AGGCAACCAA
  GGAAGAGAGC ATTTGACTGG GGCTTGTGTG CAGTTTCATG AGATGGGGGC ATGAGCAGGA
  TGGGGGATGG GGGGACAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	MOLF/EiJ
ss52226737	NES15329363	PERLEGEN	MM_PANEL2	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	MOLF/EiJ
rs50233789					SNP	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226737	NES15329363	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117550156 () rs orientation: forward

Symbol	Name	Function Class
Gm66624	predicted gene, 66624	1712 bp downstream
Gm67727	predicted gene, 67727	517 bp upstream
Rr212986	regulatory region 212986	156 bp distal
Rr212987	regulatory region 212987	1445 bp proximal
Rr225986	regulatory region 225986	1646 bp proximal
Rr385357	regulatory region 385357	1700 bp downstream
Tssr99470	transcription start site region 99470	987 bp downstream